Single-cell omics
Platform services
Single-cell genomics
Single-cell proteomics
Contacts
Single Cell -omics platform aims at bringing the latest single cell omics tools available for the research community. Services based on novel instruments are now available for single cell genomics and single cell proteomics to enable cutting-edge research in many areas of molecular biology and molecular medicine.
For single cell genomics Chromium™ instrument by 10X Genomics and InDrop™ and DropSeq™ systems enable thousands of individual cells to be transcriptionally profiled. Fluidigm Polaris™ system enables to select targeted single cells and hold them in environmentally controlled reaction chambers enabling perturbations with RNAseq readout.
For single cell proteomics we will provide services on Helios™ mass cytometry, which can differentiate up to 100 epitopes and obtain high content multiplexed protein data from single-cells. This enables the comprehensive understanding of cell phenotypes and function.
Single-cell genomics
Biocenter Kuopio
https://uefconnect.uef.fi/en/group/single-cell-genomics-core/
Helsinki Institute of Life Science - HiLIFE
https://www.helsinki.fi/en/infrastructures/single-cell-omics
https://uefconnect.uef.fi/en/group/single-cell-genomics-core/
Helsinki Institute of Life Science - HiLIFE
https://www.helsinki.fi/en/infrastructures/single-cell-omics
BioCity Turku
Single-cell proteomics
Helsinki Institute of Life Science - HiLIFE
https://www.helsinki.fi/en/infrastructures/single-cell-omics/infrastructures/single-cell-proteomics-and-genomics-bi
https://www.helsinki.fi/en/infrastructures/single-cell-omics/infrastructures/single-cell-proteomics-and-genomics-bi
BioCity Turku
Contact persons
Platform Coordinator
Pirkko Mattila (University of Helsinki, HiLIFE, FIMM, single cell analytics) / tel. +358 (0) 02941 25812 / pirkko.mattila (at) helsinki.fi
University of Helsinki
Platform Partners
Minna Kaikkonen-Määttä (University of Eastern Finland, A.I. Virtanen Institute, Single-cell Genomics), Pekka Katajisto (University of Helsinki, HiLIFE, BI, single cell proteomics and genomics), Pirkko Mattila, Pia Rantakari (BioCity Turku, single cell proteomics) and Tapio Lönnberg (BioCity Turku, functional single cell genomics)